Code

The Decoding Toolbox (TDT)

Click here to download the toolbox or read the paper.

Hebart MN*, Görgen K*, Haynes JD (2015). The Decoding Toolbox (TDT): A versatile software package for multivariate analyses of functional imaging data. Frontiers in Neuroinformatics, 8, 88; DOI: 10.3389/fninf.2014.00088.

MVPA by cross-validated MANOVA (cvMANOVA)

Click here to download the code or read the paper.

Allefeld C, Haynes JD (2014). Searchlight-based multi-voxel pattern analysis of fMRI by cross-validated MANOVA. NeuroImage, 89, 345-357; DOI: 10.1016/j.neuroimage.2013.11.043.

Permutation-based prevalence inference using the minimum statistic

Click here to download the code or read the paper.

Allefeld C, Görgen K, Haynes JD (2016). Valid population inference for information-based imaging: From the second-level t-test to prevalence inference. NeuroImage, 141, 378-392; DOI: 10.1016/j.neuroimage.2016.07.040.

Model assessment, comparison and selection (MACS)

Click here to download the toolbox, try the demo or read the paper.

Soch J, Allefeld C (2018). MACS – a new SPM toolbox for model assessment, comparison and selection. Journal of Neuroscience Methods, 306, 19-31; DOI: 10.1016/ j.jneumeth.2018.05.017.

Soch J, Meyer AP, Haynes JD, Allefeld C (2017). How to improve parameter estimates in GLM-based fMRI data analysis: cross-validated Bayesian model averaging. NeuroImage, 158, 186-195; DOI: 10.1016/j.neuroimage.2017.06.056.

Soch J, Haynes JD, Allefeld C (2016). How to avoid mismodelling in GLM-based fMRI data analysis: cross-validated Bayesian model selection. NeuroImage, 141, 469-489; DOI: 10.1016/j.neuroimage.2016.07.047.

Inverted transformation encoding modelling (ITEM)

Click here to download the code or read the preprint.

Soch J, Allefeld C, Haynes JD (2019). Inverse Transformed Encoding Models – a solution to the problem of correlated trial-by-trial parameter estimates in fMRI decoding; in review at NeuroImage, available from bioRxiv; DOI: 10.1101/610626.

Manual for the EyeLink 1000+ eye tracking system

Felix Töpfer has compiled a repository with introductory material about using the EyeLink 1000+ in MATLAB and PsychToolbox.

For further useful tools, see the GitHub profiles of Carsten Allefeld and Joram Soch.