Downloads

Install Guide

Use the links below to view the components of nttmuClinical.NET on the Nuget Gallery.
Component Nuget Package ID and Link 
Section Heading Recognition TMU-BioTextMining.i2b2.Section
Risk Factor Recognition and Time Attribute Assignment TMU-BioTextMining.i2b2.RiskFactor
Smoking Status Classification TMU-BioTextMining.i2b2.Smoking
Record Format Detection TMU-BioTextMining.i2b2.Format

To install one of the above nttmuClinical.NET components, please run the following command in the Package Manager Console with the corresponding nuget package ID.

PM> Install-Package [Nuget Package ID]

For example, if you want to install the "Section heading recognition" component, run the following command.

PM> Install-Package TMU-BioTextMining.i2b2.Section

You can also use the Manage NuGet Packages dialog box to find, install, remove, and update our nttmuClinical.NET packages by using the above package IDs. The detail instruction is available at http://docs.nuget.org/docs/start-here/managing-nuget-packages-using-the-dialog.

Resources

Use the links in the table below to download the pre-trained models for nttmuClinical.NET. 
 Section Heading Recognition 
Description Source Download 
Section Recognizer Model Trained on the i2b2 2014 Set1  dataset sampleSet1.model
Word bag information file   bag_dist.txt
SecTag section header terminology Vanderbilt Biomedical Language Processing Lab-SecTag SecTag_concepts.csv
Risk factor recognition and time attribute assignment
Description   Source   Download
 CAD event key terms   cad_event.txt
Smoking status classification
Description   Source  Download
 Smoking keyword file   smokingterms.txt
 Third-party
 Description   Source   Download
 MedPost-related files  NCBI MedPost MedPost.zip
 Stanford parser modelStanford Natural Language Processing Group-Stanford ParserenglishPCFG.ser.gz 


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MedPost.zip
(88k)
Hongjie Dai,
Aug 31, 2014, 11:24 PM
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Hongjie Dai,
Aug 31, 2014, 10:49 PM
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Hongjie Dai,
Aug 31, 2014, 10:47 PM
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Hongjie Dai,
Aug 31, 2014, 11:20 PM
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englishPCFG.ser.gz
(1885k)
Hongjie Dai,
Aug 31, 2014, 11:27 PM
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sampleSet1.model
(16124k)
Hongjie Dai,
Aug 31, 2014, 10:38 PM
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Hongjie Dai,
Aug 31, 2014, 11:14 PM