Recommended Links
| Page | Description | URL |
|---|---|---|
| STRUCTURE | STRUCTURE is an amazing tool that performs a Bayesian MCMC based clustering of multi-locus genotype data to identify subpopulation structure. Kudos to the development team for coming up with a rather seamless GUI, and allied fancy visualization tools! I highly recommend reading the original Pritchard et al. (2000) and follow up papers to understand what I term `modern' population structure delineations. | STRUCTURE |
| ADMIXTURE | ADMIXTURE is a relatively new tool from my 'grand-viser', Kenneth Lange's lab at UCLA. This tool performs accelerated EM runs on SNP data (again multilocus genotypes) to delineate subpopulation structure. | ADMIXTURE |
| EvolDir | If you're anybody that's somebody in the field of Evolutionary Biology, you'd better be on this list! | EvolDir |
| WriteLatex | This amazing WYSIWYG interface for LaTeX was my first love for LaTeX! Highly recommended for both novice and advanced users! | WriteLatex |
| The Molecular Ecologist Blog | A great blog (to which I contribute as well!) with snippets on the ins and outs in the field of population genetics, conservation, molecular ecology and evolution. | The Molecular Ecologist |
| R and CRAN | If you have not been using R for statistical computing, I recommend that you start NOW! | R |
| IM, IMA, IMA2 | A suite of tools developed by my postdoc adviser and colleagues, which performs population divergence dating under the Isolation with Migration Model (Nielsen and Wakeley 2001). I am also currently working on refurbishing this suite of tools with a bunch of new functionalities! | IM Suite |
| Evolution Tree | If you're an evolutionary biologist and wish to view your ancestors (including the nearest Nobel laureate), and connections to colleagues, be sure to check this page out! | Evolution Tree |
| Hey Lab | My current address - be sure to watch for updated software, and pubs on here too! | Hey Lab |
| Janzone | My alma mater, the Janzen lab, also called the "Janzone"! Fred and his collaborators have some of the most amazing pictures of herps! | Janzone |
| Haldane's Sieve | Pre-prints in evolution | Haldane's Sieve |
| IMa2p | Parallelized OpenMPI version of IMa2 - Isolation with Migration analyses. The new version easily handles many loci, and scales to hundreds of processors. Feel free to use it, and email me with comments/bugs/concerns. | IMa2p |
| My talk at Evolution 2016 | I describe a new method to test for the presence of differential introgression and linked selection effects at the Evolution 2016 meetings in Austin, TX | https://www.youtube.com/watch?v=HvS-Y34UKqQ |
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